Bacterial and host determinants of progression, manifestations and consequences of TB

Project 1

P1

Uganda

Brazil

Administrative Core
Systems Biology Core
Clinical Core

Scientific Aims

Overview

Historically, TB has been characterized as a two-stage process – infection and disease. It now is clear that infection and importantly the likelihood once infected of progressing to TB is heterogeneous and varies with time. ​​​​We propose now to address in human studies how bacterial and host heterogeneity modify the distribution of stages of TB infection following close contact with a TB case, the risk of progression and the manifestations and sequelae of TB disease. Historically, TB has been characterized as a two-stage process – infection and disease. It now is clear that infection and importantly the likelihood once infected of progressing to TB is heterogeneous and varies with time. We propose now to address in human studies how bacterial and host heterogeneity modify the distribution of stages of TB infection following close contact with a TB case, the risk of progression and the manifestations and sequelae of TB disease. On the bacterial side, Mtb strains from index cases could be dichotomized into high transmission (Mtb-HT) and low transmission (Mtb-LT) based on the proportion of exposed household contacts that were TST+. Mtb-HT has been associated with a greater risk of progression to disease and more cavitation on chest x-ray. In regards to host heterogeneity, we posit that risk signatures are a proxy for intrinsic differences in the host immune response to Mtb. In South Africa, the ACS- COR signature was a good correlate of PET-CT scan findings of subclinical TB. In terms of short-and long- term risk of progression, in Brazil, we characterized PREDICT29, a transcriptional signature tied to the immune response that predicted progression to TB.

Using state-of-the-art Systems Biology approaches, we will identify discrete types of interactions and network changes that tip the scales of infection either to the bacterium or to the host, as well as investigate fundamental adaptive responses that are shared between these different types of adaptations, and pilot potential therapeutic approaches.

Bacterial & Host Determinants of Progression, Manifestations & Consequences of TB

In Project 1, we will use the household contact model in a prospective cohort in Uganda and retrospective cohorts in Uganda and Brazil to partition the risk of infection with Mtb-HT between immunopathology of the index case (e.g. cavitation and subsequent lung damage), the greater force of infection for HHC, the modifying effects of PREDICT29 and co-morbidities, and increased risk of progression along the spectrum from LTBI to TB.

Scientific Aims

Specific Aims are to determine the impact of Mtb strain phenotype (eg Mtb-HT v Mtb-LT) and host heterogeneity (risk of progression signatures, co-morbidities) on the following:

1.

The distribution of stages of Mtb infection and disease in exposed HHC: the proportion of MTBI that express PREDICT29, risk of progression signature; ACS-COR, an inflammatory signature; subclinical TB and active TB

2.

The risk and timing of progression from MTBI to TB

3.

The extent and nature (e.g. cavitation) of pulmonary disease in TB index cases; the duration of inflammation; and the consequent impairment in pulmonary function

These studies could permit individualized approaches to diagnosis, targeting of preventive therapy, and treatment of active TB. They synergize with Project 2 and the Clinical Core in providing PBMC and BAL samples from well-characterized populations that will allow determination of the immunologic basis for the findings in this Project 1, and with Project 3 in providing clinical Mtb isolates known to differ in transmission and pathogenesis for the study of tolerance.

References

Cross-validation of existing signatures and derivation of a novel 29-gene transcriptomic signature predictive of progression to TB in a Brazilian cohort of household contacts of pulmonary TB
Leong S, Zhao Y, Ribeiro-Rodrigues R, Jones-Lopez EC, Acuria-Villaorduria C, Rodrigues PM, Palaci M, Alland D, Dietze R, Ellner JJ, Johnson WE, Salgame P. Cross-validation of existing signatures and derivation of a novel 29-gene transcriptomic signature predictive of progression to TB in a Brazilian cohort of household contacts of pulmonary TB. Tuberculosis (Edinb). 2020 Jan;120:101898. PubMed Central PMCID: PMC7066850.

Transmission phenotype of Mycobacterium tuberculosis strains is mechanistically linked to induction of distinct pulmonary pathology
Verma S, Bhatt K, Lovey A, Ribeiro-Rodrigues R, Durbin J, Jones-Lopez EC, Palaci M, Vinhas SA, Alland D, Dietze R, Ellner JJ, Salgame P. Transmission phenotype of Mycobacterium tuberculosis strains is mechanistically linked to induction of distinct pulmonary pathology. PLoS Pathog. 2019 Mar;15(3):e1007613. PubMed Central PMCID: PMC6422314.

Intensity of exposure to pulmonary tuberculosis determines risk of tuberculosis infection and disease
Acuria-Villaorduria C, Jones-Lopez EC, Fregona G, Marques-Rodrigues P, Gaeddert M, Geadas C, Hadad DJ, White LF, Pereira Dutra Molina L, Vinhas S, Ribeiro-Rodrigues R, Salgame P, Palaci M, Alland D, Ellner JJ, Dietze R. Intensity of exposure to pulmonary tuberculosis determines risk of tuberculosis infection and disease. Eur Respir J. 2018 Jan;51(1) PubMed Central PMCID: PMC6719538.

Clinical variables and gene signatures in tuberculosis
Acuña-Villaorduña C, Jones-López EC, Salgame P, Dietze R, Ellner JJ. Clinical variables and gene signatures in tuberculosis. Lancet Infect Dis. 2020 Nov;20(11):1227-1229. doi: 10.1016/S1473-3099(20)30702-7. PubMed PMID: 33098773.

Host Determinants of Infectiousness in Smear-Positive Patients With Pulmonary Tuberculosis
Acuña-Villaorduña C, Ayakaka I, Schmidt-Castellani LG, Mumbowa F, Marques-Rodrigues P, Gaeddert M, White LF, Palaci M, Ellner JJ, Dietze R, Joloba M, Fennelly KP, Jones-López EC. Host Determinants of Infectiousness in Smear-Positive Patients With Pulmonary Tuberculosis. Open Forum Infect Dis. 2019 Jun;6(6):ofz184. doi: 10.1093/ofid/ofz184. eCollection 2019 Jun. PubMed PMID: 31205972; PubMed Central PMCID: PMC6557197.